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Navy and NOAA Search for U.S. Schooner Alligator near the 200th Anniversary of Its Loss

Oct. 26, 2022 | By Dr. George Schwarz
In early September 2022, Naval History and Heritage Command (NHHC) and the National Oceanic and Atmospheric Administration’s Office of National Marine Sanctuaries (ONMS) collaborated on a project to locate and study one of the U.S. Navy’s historic wrecks from the early 19th century, the schooner Alligator. The two week project, which took place in Florida Keys National Marine Sanctuary, involved underwater archaeologists and cultural resource experts from the two agencies to search shallow reefs in the vicinity of where the schooner was reportedly lost.

U.S. Schooner Alligator plans of spars and sails at Boston Navy Yard.
U.S. Schooner Alligator plans of spars and sails at Boston Navy Yard.
U.S. Schooner Alligator plans of spars and sails at Boston Navy Yard.
USS Alligator
U.S. Schooner Alligator plans of spars and sails at Boston Navy Yard.
Photo By: Courtesy
VIRIN: 221026-N-IP911-0001
Constructed in 1820, the U.S. naval schooner Alligator was one of five vessels built for anti-slavery and anti-piracy patrol at a time when American naval forces were beginning to extend the nation’s reach beyond its coastal waters. These schooners were swift, powerfully armed, and versatile. Alligator was 86 ft. in length, carried 13 guns - a combination of an 18-pounder pivoting cannon and 6-pounder carronades - and had fine lines and a coppered hull to facilitate operations in the open sea.

Under the command of its first captain, Lt. Robert F. Stockton, Alligator sailed to West Africa where its crew captured several slaving vessels. On the same cruise, Alligator carried Dr. Eli Ayers, a representative of the American Colonization Society to Cape Mesurado, where he and Stockton negotiated for land to found a colony for the resettlement of enslaved Africans. The colony later became the Republic of Liberia.  On its second cruise, Alligator returned to the West African coast and again captured vessels engaged in the slave trade.

Blair Atcheson (NHHC) and Madeline Roth (NOAA) launch the marine magnetometer. This instrument is deployed in water and towed behind the survey boat to record magnetic anomalies on the seabed. Shipwrecks like Alligator record as large magnetic anomalies due to the large amount of iron ballast on board.
Blair Atcheson (NHHC) and Madeline Roth (NOAA) launch the marine magnetometer. This instrument is deployed in water and towed behind the survey boat to record magnetic anomalies on the seabed. Shipwrecks like Alligator record as large magnetic anomalies due to the large amount of iron ballast on board.
Blair Atcheson (NHHC) and Madeline Roth (NOAA) launch the marine magnetometer. This instrument is deployed in water and towed behind the survey boat to record magnetic anomalies on the seabed. Shipwrecks like Alligator record as large magnetic anomalies due to the large amount of iron ballast on board.
Launch the Magnetometer
Blair Atcheson (NHHC) and Madeline Roth (NOAA) launch the marine magnetometer. This instrument is deployed in water and towed behind the survey boat to record magnetic anomalies on the seabed. Shipwrecks like Alligator record as large magnetic anomalies due to the large amount of iron ballast on board.
Photo By: Courtesy
VIRIN: 221026-N-IP911-0002
Dispatched to the Caribbean Sea on its third cruise under captain Lt. William Allen, the schooner’s crew seized several pirate vessels off Cuba. During one engagement, eight sailors were killed or wounded including Lt. Allen who succumbed to his injuries. Lt. John Dale took command after Allen’s death and turned the schooner towards the U.S. with a convoy of merchant vessels . Heading north for Boston in November 1822, Alligator struck an uncharted reef off of the Florida Keys, resulting in a total loss of the hull. Heavy items were jettisoned or transferred to other vessels in attempts to free the schooner, but it was too embedded in the reef and could not be saved. After removing most valuable items, the crew burned the ship to prevent salvage by pirates.

Alexis Catsambis (NHHC) and Bob Neyland (NHHC) prepare to investigate anomalies. While the magnetometer records anomalies, it does not provide a clear visual of the object. Divers or snorkelers are deployed to examine the anomaly and determine its archaeological and historical significance. If any artifacts are exposed, possible dating or identification efforts can follow. If the object is buried, probing or excavation may follow.
Alexis Catsambis (NHHC) and Bob Neyland (NHHC) prepare to investigate anomalies. While the magnetometer records anomalies, it does not provide a clear visual of the object. Divers or snorkelers are deployed to examine the anomaly and determine its archaeological and historical significance. If any artifacts are exposed, possible dating or identification efforts can follow. If the object is buried, probing or excavation may follow.
Alexis Catsambis (NHHC) and Bob Neyland (NHHC) prepare to investigate anomalies. While the magnetometer records anomalies, it does not provide a clear visual of the object. Divers or snorkelers are deployed to examine the anomaly and determine its archaeological and historical significance. If any artifacts are exposed, possible dating or identification efforts can follow. If the object is buried, probing or excavation may follow.
Investigation prep
Alexis Catsambis (NHHC) and Bob Neyland (NHHC) prepare to investigate anomalies. While the magnetometer records anomalies, it does not provide a clear visual of the object. Divers or snorkelers are deployed to examine the anomaly and determine its archaeological and historical significance. If any artifacts are exposed, possible dating or identification efforts can follow. If the object is buried, probing or excavation may follow.
Photo By: Courtesy
VIRIN: 221026-N-IP911-0003
While the reef upon which Alligator was supposedly wrecked was named after the ship, and a lighthouse with the same name was later installed in the vicinity, little to no mention of its precise resting place survives in available records. Neither are there records of the vessel’s subsequent salvage, though this undoubtedly occurred to some degree as local and Bahamian wreckers were prevalent in the area.

Surveying near Alligator Reef Lighthouse. It was constructed in 1873 and continued service until 2014. The structure marks the nearby reef system that caused several shipwrecks prior to its construction. It is named for Alligator, which may have wrecked in the vicinity of the lighthouse.
Surveying near Alligator Reef Lighthouse. It was constructed in 1873 and continued service until 2014. The structure marks the nearby reef system that caused several shipwrecks prior to its construction. It is named for Alligator, which may have wrecked in the vicinity of the lighthouse.
Surveying near Alligator Reef Lighthouse. It was constructed in 1873 and continued service until 2014. The structure marks the nearby reef system that caused several shipwrecks prior to its construction. It is named for Alligator, which may have wrecked in the vicinity of the lighthouse.
Alligator Lighthouse
Surveying near Alligator Reef Lighthouse. It was constructed in 1873 and continued service until 2014. The structure marks the nearby reef system that caused several shipwrecks prior to its construction. It is named for Alligator, which may have wrecked in the vicinity of the lighthouse.
Photo By: Courtesy
VIRIN: 221026-N-IP911-0006
In the mid-1990s, an effort was made to document a shipwreck believed by many to be the remains of Alligator near the Alligator Reef Lighthouse. Navy and NOAA archaeologists participated in this study and recorded hull construction features to compare with known records of Alligator’s design. No iron ballast or military artifacts were documented on that site fueling skepticism on the identity of the wreck near the lighthouse. In 2004, Navy and ONMS researchers conducted remote sensing operations along parts of the same reef to determine if there were other Alligator wreck candidates nearby – concluding that none meeting the naval vessel’s characteristics were present within the planned survey area.

Madeline Roth (NOAA) surveys shallow wreck remains from the survey. Identified during a visual survey, this shipwreck is examined closely by archaeologists. Structural elements, like fasteners and construction materials, are inspected to date and identify the shipwreck. The Florida Keys is rich in shipwrecks and more than a few were encountered during our survey efforts.
Madeline Roth (NOAA) surveys shallow wreck remains from the survey. Identified during a visual survey, this shipwreck is examined closely by archaeologists. Structural elements, like fasteners and construction materials, are inspected to date and identify the shipwreck. The Florida Keys is rich in shipwrecks and more than a few were encountered during our survey efforts.
Madeline Roth (NOAA) surveys shallow wreck remains from the survey. Identified during a visual survey, this shipwreck is examined closely by archaeologists. Structural elements, like fasteners and construction materials, are inspected to date and identify the shipwreck. The Florida Keys is rich in shipwrecks and more than a few were encountered during our survey efforts.
Resting Place
Madeline Roth (NOAA) surveys shallow wreck remains from the survey. Identified during a visual survey, this shipwreck is examined closely by archaeologists. Structural elements, like fasteners and construction materials, are inspected to date and identify the shipwreck. The Florida Keys is rich in shipwrecks and more than a few were encountered during our survey efforts.
Photo By: Courtesy
VIRIN: 221026-N-IP911-0005
Now, 200 years after the sinking of the schooner, Navy and ONMS archaeologists once again set out to find the remains of the elusive Alligator. During the September 2022 project, NHHC and ONMS researchers surveyed additional areas considered part of “Alligator Reef” or adjoining reefs using marine magnetometer, side scan sonar, and multibeam echosounder instruments to map the seafloor and search for wreck remains. A joint Navy-ONMS archaeological dive team investigated shipwreck sites discovered during the survey as well as sites that were reported to ONMS by local fisherman and divers but not yet verified. The team visited six wrecks and an 18th century anchor not previously documented. Instead of intact hull remains, the located wrecks mostly consisted of scattered concreted materials strewn across reefs and partly buried in sandy and grassy bottoms. Some of the concretions represented ship’s fasteners, hardware, and other material probably from later in the 19th century. One site contained hull planking and other wooden structure, but was built later than Alligator. Another scattered site contained what appeared to be sections of steel hull remains. Divers found a few pieces of what may be iron ballast , but not in the concentrations expected from the schooner – which was known from naval records to have carried over 19 tons of pig iron ballast.

George Schwarz (NHHC) conducts a metal detector survey over a wreck site. Divers can be deployed with tools, like metal detectors, to assist in identifying or pinpointing iron objects. Some objects become overgrown with marine life and are difficult identify with the naked eye. If the object is buried, more exact location data will assist future research efforts.
George Schwarz (NHHC) conducts a metal detector survey over a wreck site. Divers can be deployed with tools, like metal detectors, to assist in identifying or pinpointing iron objects. Some objects become overgrown with marine life and are difficult identify with the naked eye. If the object is buried, more exact location data will assist future research efforts.
George Schwarz (NHHC) conducts a metal detector survey over a wreck site. Divers can be deployed with tools, like metal detectors, to assist in identifying or pinpointing iron objects. Some objects become overgrown with marine life and are difficult identify with the naked eye. If the object is buried, more exact location data will assist future research efforts.
Site Survey
George Schwarz (NHHC) conducts a metal detector survey over a wreck site. Divers can be deployed with tools, like metal detectors, to assist in identifying or pinpointing iron objects. Some objects become overgrown with marine life and are difficult identify with the naked eye. If the object is buried, more exact location data will assist future research efforts.
Photo By: Courtesy
VIRIN: 221026-N-IP911-0004
The team stayed at the Boy Scouts of America Sea Base in Islamorada, Florida, which also provided dock space for the NHHC research vessel. After the initial two-week survey, ONMS continued surveying in the area with research partners from East Carolina University, Florida Public Archaeology Network, and Task Force Dagger Foundation, a veteran’s group trained in locating submerged cultural resources. Although a proposed candidate for the wrecked Alligator has not yet been identified, the Navy and ONMS team is narrowing down the possible wreck locations along the reef. Archaeologists have already found several target areas to examine during a follow up survey and plan to continue searching for the remains of this unique vestige of America’s naval and maritime history.